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Local interactions and protein folding : A model study on the square and triangular lattices

We study a simple heteropolymer model containing sequence-independent local interactions on both square and triangular lattices. Sticking to a two-letter code, we investigate the model for varying strength κ of the local interactions; κ=0 corresponds to the well-known HP model [K. F. Lau and K. A. Dill, Macromolecules 22, 3986 (1989)]. By exhaustive enumerations for short chains, we obtain all str

Identification of amino acid sequences with good folding properties in an off-lattice model

Folding properties of a two-dimensional toy protein model containing only two amino acid types, hydrophobic and hydrophilic, respectively, are analyzed. An efficient Monte Carlo procedure is employed to ensure that the ground states are found. The thermodynamic properties are found to be strongly sequence dependent in contrast to the kinetic ones. Hence, criteria for good folders are defined entir

Studies of an off-lattice model for protein folding : Sequence dependence and improved sampling at finite temperature

We study the thermodynamic behavior of a simple off-lattice model for protein folding. The model is two dimensional and has two different "amino acids." Using numerical simulations of all chains containing eight or ten monomers, we examine the sequence dependence at a fixed temperature. It is shown that only a few of the chains exist in unique folded state at this temperature, and the energy level

Hybrid Monte Carlo simulation of polymer chains

We develop the hybrid Monte Carlo method for simulations of single off-lattice polymer chains. We discuss implementation and choice of simulation parameters in some detail. The performance of the algorithm is tested on models for homopolymers with short- or long-range self-repulsion, using chains with 16≤N≤512 monomers. Without excessive fine tuning, we find that the computational cost grows as N2

Scaling in Steiner random surfaces

It has been suggested that the modified Steiner action functional has desirble properties for a random surface action. In this paper we investigate the scaling of the string tension and massgap in a variant of this action on dynamically triangulated random surfaces and compare the results with the gaussian plus extrinsic curvature actions that have been used previously.

Detection and attenuation of feedback induced howling in hearing aids using subband zero-crossing measures

A modern hearing aid should be aesthetically appealing as well as offer sufficient and adequate signal amplification. Due to the small physical size of these devices, acoustical feedback (howling) is a major problem. Apart from the annoyance and potential hearing damaging effects that howling implies, it also reduces the supplied maximum Real Ear Aided Gain (REAG). This paper proposes a novel method

Direction of arrival estimation for multiple speakers using time-frequency orthogonal signal separation

This paper presents a new approach for multiple speaker DOA estimation using an array of microphones. The method relies on the fact that multiple independent speakers have a small overlap in the time-frequency domain, i.e. the individual signals are almost W-disjoint orthogonal. By introducing a time-frequency mask and by continuously tracking the set of time-frequency points corresponding to each

Blind Source Separation of Speech Mixtures using a Simple and Computationally Efficient Time- Frequency Approach

A very simple and extremely computationally efficient algorithm for blind separation of two speech sources from two mixtures is presented in this paper. The algorithm exploits the approximate W-disjoint orthogonality of speech signals and assumes specific sensors (microphones) setting that allows the sources to possess a feature we call cross high-low diversity. Two sources are said to be cross hi

Real-Time DSP Implementation of a Subband Beamforming Algorithm for Dual Microphone Speech Enhancement

A real-time digital signal processor (DSP) based implementation of a subband beamforming algorithm and its evaluation for dual microphone speech enhancement is presented. The algorithm, a calibrated constrained beamformer, is described theoretically and a real-time structure is proposed, including an efficient approach for multichannel data transformation. Measurements show that the battery driven

A Delay-Based Constrained Beamformer for Blind Speech Enhancement and Dereverberation

This paper presents a new microphone array method to enhance speech signals in a noisy reverberant environment. A time-delay estimation method is used for the speech source localization. The robustness of the localization method in high noise levels is provided by a subband Kurtosis-weighted structure. The estimated inter-sensor time-delays are directly used in an adaptive soft-constrained subband

Detection of Vehicle Mounted Auditory Reverse Alarm using Hidden Markov Model

-This paper presents a method for automatically detecting vehicle mounted auditory reverse alarms, or other similar warning signals, based on hidden Markov model and pattern matching techniques. The method is designed for embedded realtime platforms. The purpose of the method is to embed it with active hearing protection devices, aiding the user in detecting warning signals in low SNR environments

Distinguishing True and False Source Locations when Localizing Multiple Concurrent Speech Sources

A permutation problem arises in the case of locating multiple speech sources using several sensor arrays in the far field. The intersection of different direction of arrival (DOA) estimates between sensor arrays leads to a set of real source locations as well as a set of false intersections. This paper presents a novel method for pairing DOA estimates from different sensor arrays, resulting in the

An old mom keeps you young: Mother’s age at last birth and offspring longevity in 19th century Utah

This study analyzes the intergenerational effects of late child bearing on offspring’s adult longevity in a population in Utah (USA) that does not display evidence of parity-specific birth control – a so-called natural fertility population. Studies have found that for women who experience late menopause and prolonged reproduction, aging is postponed and longevity is increased. This is believed to

Effective dispersion and separation resolution in continuous particle fractionation

Theoretical models and experiments suggest that the transport of suspended particles in microfluidics-based sorting devices can be modeled by a two-dimensional effective advection-diffusion process characterized by constant average velocity, $$\mathbf {W}$$W, and a typically anisotropic dispersion tensor, $$\mathbb {D}$$D, whose principal axes are slanted with respect to the direction of the effec

Incompatibility Alleles; Characteristics of a 1-Locus System

The 1-locus incompatibility system that is usually assumed to be present in the red clover is investigated. The allele fluctuations from one generation to the other are demonstrated. A mathematical state model is deduced for arbitrary numbers of alleles in the population, and its steady-state behaviour and stability are discussed. The eigenvalues of the linearized models as well as simulations sho

Laminar dispersion at high Péclet numbers in finite-length channels : Effects of the near-wall velocity profile and connection with the generalized Leveque problem

This article develops the theory of laminar dispersion in finite-length channel flows at high Péclet numbers, completing the classical Taylor-Aris theory which applies for long-term, long-distance properties. It is shown, by means of scaling analysis and invariant reformulation of the moment equations, that solute dispersion in finite length channels is characterized by the occurrence of a new reg