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Sequence Sensitivity of Breathing Dynamics in Heteropolymer DNA
Dynamic Approach to DNA Breathing
Even under physiological conditions, the DNA double-helix spontaneously denatures locally, opening up fluctuating, flexible, single-stranded zones called DNA-bubbles. We present a dynamical description of this DNA-bubble breathing in terms of a Fokker-Planck equation for the bubble size, based on the Poland-Scheraga free energy for DNA denaturation. From this description, we can obtain basic quant
Directed motion emerging from two coupled random processes: translocation of a chain through a membrane nanopore driven by binding proteins
We investigate the translocation of a stiff polymer consisting of M monomersthrough a nanopore in a membrane, in the presence of binding particles(chaperones) that bind onto the polymer, and partially prevent backsliding ofthe polymer through the pore. The process is characterized by the rates: kfor the polymer to make a diffusive jump through the pore, q for unbinding ofa chaperone, and the rate
Binding dynamics of single-stranded DNA binding proteins to fluctuating bubbles in breathing DNA
We investigate the dynamics of a single local denaturation zone in a DNA molecule, a so-called DNA bubble, in the presence of single-stranded DNA binding proteins (SSBs). In particular, we develop a dynamical description of the process in terms of a two-dimensional master equation for the time evolution of the probability distribution of having a bubble of size m with n bound SSBs, for the case wh
Simulation based investigation of achieving low temperature combustion with methanol in a direct injected compression ignition engine
Low temperature combustion concepts used in compression ignition engines have shown to be able to produce simultaneous reduction of oxides of nitrogen and soot as well as generating higher gross indicated efficiencies compared to conventional diesel combustion. This is achieved by a combination of premixing, dilution and optimization of combustion phasing. Low temperature combustion can be comple
Comparison of kinetic mechanisms for numerical simulation of methanol combustion in dici heavy-duty engine
The combustion process in a homogeneous charge compression ignition (HCCI) engine is mainly governed by ignition wave propagation. The in-cylinder pressure, heat release rate, and the emission characteristics are thus largely driven by the chemical kinetics of the fuel. As a result, CFD simulation of such combustion process is very sensitive to the employed reaction mechanism, which model the real
Aggregation of Information as a Basis for Risk and Vulnerability Assessments
Konferensbidraget presenterar en forskningsplan för studiet av möjligheter och utmaningar behäftade med aggregering (insamling och sammanvägning) av den information som sammanställs i svenska myndigheters risk- och sårbarhetsanalyser.
Cylinder to cylinder variation related to gas injection timing on a dual-fuel engine
The natural gas/diesel dual-fuel engine is an interesting technique to reduce greenhouse gas emission. A limitation of this concept is the emission of un-combusted methane. In this study we analyzed the influence of PFI gas-injection timing on cylinder to cylinder gas-distribution, and the resulting methane emissions. This was done on a 6 cylinder HD engine test bench and in a GT-power simulation
The WNT5A Agonist Foxy5 Reduces the Number of Colonic Cancer Stem Cells in a Xenograft Mouse Model of Human Colonic Cancer
BACKGROUND: The wingless-type mammary tumour virus integration site 5A (WNT5A) agonist Foxy5 was shown in vitro to affect intracellular signalling implicated in the regulation of colonic cancer stem cells (CSCs). MATERIALS AND METHODS: In order to study whether Foxy5 can modulate CSCs, either HT-29 or Caco-2 human colonic cancer cells, both lacking endogenous WNT5A expression, were inoculated subc
Temptation, Resistance, and Art Objects : On the Lack of Material Theory within Art History before the Material Turn
Calculated arterial blood gas values from a venous sample and pulse oximetry : Clinical validation
Background Arterial blood gases (ABG) are essential for assessment of patients with severe illness, but sampling is difficult in some settings and more painful than for peripheral venous blood gas (VBG). Venous to Arterial Conversion (v-TAC; OBIMedical ApS, Denmark) is a method to calculate ABG values from a VBG and pulse oximetry (SpO 2 ). The aim was to validate v-TAC against ABG for measuring
Vem vill att EU inkvoteras på Netflix?
On EU media policy with regard to the upcoming EU election
1.57 µm fiber source for atmospheric CO 2 continuous-wave differential absorption lidar
We present an efficient fiber source designed for continuous-wave differential absorption light detection and ranging (CW DIAL) of atmospheric CO 2 -concentration. It has a linewidth of 3 MHz, a tuning range of 2 nm over the CO 2 absorption peaks at 1.572 µm, and an output power of 1.3 W limited by available pump power. Results from the initial CW DIAL testing are also presented and discussed.
Towards equitable surgical systems : Development and outcomes of a national surgical, obstetric and anaesthesia plan in Tanzania
Despite emergency and essential surgery and anaesthesia care being recognised as a part of Universal Health Coverage, 5 billion people worldwide lack access to safe, timely and affordable surgery and anaesthesia care. In Tanzania, 19% of all deaths and 17 % of disability-adjusted life years are attributable to conditions amenable to surgery. It is recommended that countries develop and implement N
In situ observations of a reduction in effective crystal diameter in cirrus clouds near flight corridors
Measurements of the crystal size distribution performed over Southern Germany show that the effective diameter decrease 10-30% in cirrus clouds perturbed by aircraft. The reduction is more pronounced at higher cloud water content and is not observed at temperatures warmer than -30°C.
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Study of the rare decays of B s 0 and B 0 mesons into muon pairs using data collected during 2015 and 2016 with the ATLAS detector
A study of the decays B s 0 → μ + μ − and B 0 → μ + μ − has been performed using 26.3 fb −1 of 13 TeV LHC proton-proton collision data collected with the ATLAS detector in 2015 and 2016. Since the detector resolution in μ + μ − invariant mass is comparable to the B s 0 -B 0 mass difference, a single fit determines the signal yields for both decay modes. This results in a measurement of the branchi
Effect of amino group protonation on the carboxyl group in aqueous glycine observed by O 1s X-ray emission spectroscopy
The valence electronic structures of the amino acid glycine in aqueous solution were investigated in detail through X-ray emission spectroscopy at O 1s excitation under selective excitation conditions of the C[double bond, length as m-dash]O site in the carboxyl group. The X-ray emission spectra of glycine were similar to that of acetic acid (CH3COOH), suggesting a resemblance between the molecula