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Clinical-grade validation of whole genome sequencing reveals robust detection of low-frequency variants and copy number alterations in CLL

The 100 000 Genome Project aims to develop a diagnostics platform by introducing whole genome sequencing (WGS) into clinical practice. Samples from patients with chronic lymphocytic leukaemia were subjected to WGS. WGS detection of single nucleotide variants and insertion/deletions were validated by targeted next generation sequencing showing high concordance (96·3%), also for detection of sub-clo

Avian MHC : Characterization and expression patterns of classical and non-classical MHC-I genes

Alla ryggradsdjur har ett immunförsvar vars funktion är att skydda oss mot mikroorganismer som kan orsaka sjukdom, såsom bakterier och virus. Dessa sjukdomsframkallande ämnen kallas patogener. Immunförsvaret behöver kunna skilja mellan proteiner som kommer från den egna kroppen och från patogener. Molekylerna som kodas av gener i major histocompatibility complex (MHC) har en viktig del i denna igeThe function of the vertebrate immune system is to enable recognition and elimination of microorganisms that can cause harm (pathogens). A key component in adaptive immunity is the major histocompatibility complex (MHC) that codes for molecules with antigen presentation function. There are two main types of MHC molecules, class-I (MHC-I) and class-II (MHC-II) and the focus of my thesis has been MH

Vehicle driving cycle simulation of a pneumatic hybrid bus based on experimental engine measurements

In the study presented in this paper, a vehicle driving cycle simulation of the pneumatic hybrid has been conducted. The pneumatic hybrid powertrain has been modeled in GT-Power and validated against experimental data. The GT-Power engine model has been linked with a MATLAB/simulink vehicle model. The engine in question is a single-cylinder Scania D12 diesel engine, which has been converted to wor

The stereotype of women in Yemeni Folk Literature

Although folk culture in Yemen is characterised by respect for women and their role in society, folktales contain stereotypical patterns that are not very different from the negative portrayals of women in other media. Folktales in Yemen create a negative image of women, but this image is hidden under the aesthetic aspect, as cultural patterns embedded in the consolidation of this negative image.

The Media Discourse and Human Rights in Yemen

The Charter of the United Nations emphasizes the importance of freedom of expression as well as the Universal Declaration of Human Rights. However, freedom of expression and press freedoms are at their worst, especially in the Middle East, and in Yemen in particular. While there are violations against journalists, there are serious violations committed by journalists and press institutions that th

Development and Applications of a Laser-Wakefield X-ray Source

In laser-wakefield acceleration (LWFA), a femtosecond laser pulse is tightly focused in a gas to intensities exceeding 1018 W/cm2 . The laser radiation ionizes the medium and excites a plasma wave that travels behind the laser pulse. Electrons can be trapped in the oscillations in the plasma density, where electric fields of the order of several hundreds of GV/m accelerate them to relativistic ene

Kleptoplastidic benthic foraminifera from aphotic habitats : insights into assimilation of inorganic C, N and S studied with sub-cellular resolution

The assimilation of inorganic compounds in foraminiferal metabolism compared to predation or organic matter assimilation is unknown. Here, we investigate possible inorganic-compound assimilation in Nonionellina labradorica, a common kleptoplastidic benthic foraminifer from Arctic and North Atlantic sublittoral regions. The objectives were to identify the source of the foraminiferal kleptoplasts, a

Globalization and the Jobs Ladder

Globalization might affect the mix of jobs available in an economy and the rate at which workers gain skills. We develop a model in which firms differ in terms of productivity and skills and use the model to examine how globalization affects the wage distribution and the career path of workers as they move up the jobs ladder. There are two types of skills that determine a worker’s productivity in

Circular Economy - Sustainable Materials Management : A compendium by the International Institute for Industrial Environmental Economics (IIIEE) at Lund University

The scope of the compendium covers many parts of theemerging circular economy. We choose to place considerablefocus on some of the substances that we extract from theground – in particular raw materials and critical materials.We focus on circularity in these areas, because presentlywe use too much, too fast, and we are not re-using nearlyenough. In turn, this approach demands that we look atthe te

The Normality Assumption in Coordination Games with Flexible Information Acquisition

Many economic models assume that random variables follow normal (Gaussian) distributions. Yet, real-world variables may be non-normally distributed. How sensitive are these models’ predictions to distribution misspecifications? This paper addresses the question in the context of linear-quadratic beauty contests played by rationally inattentive players. It breaks with the assumption that the (commo

Ecology and Genomics of a male-killing Wolbachia

In my PhD thesis I have studied different aspects of the biology of the male-killing (MK) Wolbachia strain wBol1 that infects the tropical butterfly Hypolimnas bolina. First I have investigated the causes and consequences of the recent spread of wBol1 in the South Pacific Islands, bringing new insights into the biogeography of this bacterium. Theoretical studies predicted that MK symbionts could n

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La valorisation des plantes indigènes et endémiques de Polynésie française ne doit pas faire oublier la nécessité de conserver ce patrimoine naturel déjà fortement menacé par les activités humaines. Comme le souligne François Ramade (1999 :210), « le rôle croissant joué par les substances extraites de plantes dans la recherche et le développement de l’industrie pharmaceutique constitue à lui seul