Automated workflow for optimization of data independent acquisition mass spectrometry settings
Over recent years, mass spectrometry has become essential for advancing proteomics. A typical approach in proteomics involves digesting proteins into peptides, analyzing these peptides using liquid chromatography and mass spectrometry (LC-MS), and identifying them via tandem mass spectrometry (MS/MS). In Data-Dependent Acquisition (DDA), quantification is often achieved by counting MS/MS spectra o